Research workbench
The structure of orfy from thermoproteus tenax
Analyse The structure of orfy from thermoproteus tenax in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4CSO
- Type
- protein
- Length
- 861 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Orfy protein, transcription factor
- UniProt
- Q703X1
- Pockets
- 9 · best druggability 0.75
Structure
x-ray diffraction · 3 distinct chains · 53% helix, 20% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Orfy protein, transcription factor | protein | 216 | 53% helix, 19% strand | Q703X1 |
| B, C | Orfy protein, transcription factor | protein | 215 | 54% helix, 20% strand | Q703X1 |
| D | Orfy protein, transcription factor | protein | 215 | 52% helix, 20% strand | Q703X1 |
Pockets
9 pockets found on a 1 Å grid, 9 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 272 | 0.75 | 0.88 | 37 | empty |
| 2 | 314 | 0.74 | 0.87 | 38 | empty |
| 3 | 295 | 0.74 | 0.87 | 38 | empty |
| 4 | 275 | 0.73 | 0.87 | 34 | empty |
| 5 | 395 | 0.70 | 0.81 | 51 | empty |
Interfaces
6 interfaces between chains.
- A–D · 1256 Ų buried · 16 hydrogen bonds · protein-protein
- B–C · 1226 Ų buried · 10 hydrogen bonds · protein-protein
- B–D · 584 Ų buried · 8 hydrogen bonds · protein-protein
- A–C · 572 Ų buried · 10 hydrogen bonds · protein-protein
- A–B · 164 Ų buried · 0 hydrogen bonds · protein-protein
Compared structures
- 4CSO · The structure of OrfY from Thermoproteus tenax · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q703X1
- Elsewhere: RCSB PDB 4CSO · PDBe 4CSO · UniProt Q703X1
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