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Structure of monomeric ralstonia solanacearum lectin

Analyse Structure of monomeric ralstonia solanacearum lectin in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 4CSD
Type: protein
Length: 533 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Fucose-binding lectin protein
UniProt: Q8XXK6
Ligands: MFU
Pockets: 3 · best druggability 0.75

Structure

x-ray diffraction · 2 distinct chains · 0% helix, 68% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Fucose-binding lectin protein	protein	266	0% helix, 68% strand	Q8XXK6
B	Fucose-binding lectin protein	protein	267	0% helix, 67% strand	Q8XXK6

Ligands and binding sites

MFU · methyl alpha-L-fucopyranoside · ligand · 12 copies · chains A, B
GOL · Glycerol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	731	0.75	0.81	78	GOL
2	675	0.74	0.81	69	empty
3	417	0.66	0.79	47	MFU

Interfaces

1 interface between chains.

A–B · 322 Å² buried · 3 hydrogen bonds · protein-protein

Compared structures

4CSD · Structure of Monomeric Ralstonia solanacearum lectin · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q8XXK6
Elsewhere: RCSB PDB 4CSD · PDBe 4CSD · UniProt Q8XXK6

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