Research workbench
Structure of proximal thread matrix protein 1 (PTMP1) from the mussel byssus
Analyse Structure of proximal thread matrix protein 1 (PTMP1) from the mussel byssus in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4CN8
- Type
- protein
- Length
- 393 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Proximal thread matrix protein 1
- UniProt
- Q8T5C2
- Ligands
- SO4
- Pockets
- 2 · best druggability 0.52
Structure
x-ray diffraction · 1 distinct chain · 38% helix, 26% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Proximal thread matrix protein 1 | protein | 393 | 38% helix, 26% strand | Q8T5C2 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 209 | 0.52 | 0.77 | 33 | empty |
| 2 | 196 | 0.51 | 0.77 | 24 | EDO |
Modifications
Observed in the structure: 3 disulfide, 1 modified (disulfide, acetylation).
Compared structures
- 4CN8 · Structure of proximal thread matrix protein 1 (PTMP1) from the mussel byssus · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8T5C2
- Elsewhere: RCSB PDB 4CN8 · PDBe 4CN8 · UniProt Q8T5C2
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