Research workbench
Rrm domain from C. elegans sup-12 bound to ggugugc RNA
Analyse Rrm domain from C. elegans sup-12 bound to ggugugc RNA in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4CIO
- Type
- protein + RNA
- Length
- 104 residues
- Chains
- 2
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Protein sup-12, isoform a; 5'-R(*GP*GP*UP*GP*UP*GP*CP)-3'
- UniProt
- O45189
Structure
solution nmr · 2 distinct chains · 21% helix, 31% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Protein sup-12, isoform a | protein | 97 | 21% helix, 31% strand | O45189 |
| B | 5'-R(*GP*GP*UP*GP*UP*GP*CP)-3' | rna | 7 | — | — |
Interfaces
1 interface between chains.
- A–B · 772 Ų buried · 15 hydrogen bonds · protein-nucleic
Compared structures
- 4CIO · RRM domain from C. elegans SUP-12 bound to GGUGUGC RNA · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O45189
- Elsewhere: RCSB PDB 4CIO · PDBe 4CIO · UniProt O45189
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