Research workbench
Glycera dibranchiata hemoglobin. structure and refinement at 1.5 ångströms resolution
Analyse Glycera dibranchiata hemoglobin. structure and refinement at 1.5 ångströms… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1HBG
- Type
- protein
- Length
- 147 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Hemoglobin (carbonmonoxy)
- UniProt
- P02216
- Ligands
- HEM, CMO
- Pockets
- 1 · best druggability 0.74
Structure
x-ray diffraction · 1 distinct chain · 77% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Hemoglobin (carbonmonoxy) | protein | 147 | 77% helix, 0% strand | P02216 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 249 | 0.74 | 0.87 | 29 | HEM, CMO |
Compared structures
- 1HBG · Glycera dibranchiata hemoglobin. structure and refinement at 1.5 ångströms resolution · the same entry in another collection · chain A against A, TM-score 1.00
- P02216 · AlphaFold monomer V2.0 prediction for globin, major monomeric component (P02216) · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P02216
- Elsewhere: RCSB PDB 1HBG · PDBe 1HBG · UniProt P02216
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