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The structure of GH26 beta-mannanase CJMAN26C from cellvibrio japonicus in complex with manmim

Analyse The structure of GH26 beta-mannanase CJMAN26C from cellvibrio japonicus in… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 4CD5
Type: protein
Length: 367 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Endo-1,4-beta mannanase, putative, MAN26C
EC: 3.2.1.78
UniProt: B3PGI1
Ligands: MVL, BMA, NA
Pockets: 1 · best druggability 0.52

Structure

x-ray diffraction · 1 distinct chain · 39% helix, 15% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Endo-1,4-beta mannanase, putative, MAN26C (EC 3.2.1.78)	protein	367	39% helix, 15% strand	B3PGI1

Ligands and binding sites

MVL · (5R,6R,7S,8R)-5-(hydroxymethyl)-5,6,7,8-tetrahydroimidazo[1,2-a]pyridine-6,7,8-triol · ligand · chains A
BMA · beta-D-mannopyranose · sugar · chains A
NA · Sodium ion · metal · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	253	0.52	0.75	26	BMA, MVL

Compared structures

4CD5 · The structure of GH26 beta-mannanase CjMan26C from Cellvibrio japonicus in complex with… · the same entry in another collection · chain A against A, TM-score 1.00

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Every structure of UniProt B3PGI1
Elsewhere: RCSB PDB 4CD5 · PDBe 4CD5 · UniProt B3PGI1

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