Research workbench
Structure of lytic transglycosylase mltc from escherichia COLI at 2.3 a resolution.
Analyse Structure of lytic transglycosylase mltc from escherichia COLI at 2.3 a… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4C5F
- Type
- protein
- Length
- 660 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Membrane-bound lytic murein transglycosylase C
- EC
- 4.2.2.-
- UniProt
- C5A0N2
- Pockets
- 8 · best druggability 0.54
Structure
x-ray diffraction · 1 distinct chain · 53% helix, 13% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Membrane-bound lytic murein transglycosylase C (EC 4.2.2.-) | protein | 330 | 53% helix, 13% strand | C5A0N2 |
Pockets
8 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 293 | 0.54 | 0.75 | 32 | empty |
| 2 | 128 | 0.50 | 0.80 | 21 | empty |
| 3 | 168 | 0.48 | 0.77 | 28 | empty |
| 4 | 55 | 0.43 | 0.82 | 13 | empty |
| 5 | 116 | 0.42 | 0.76 | 22 | empty |
Interfaces
1 interface between chains.
- A–B · 648 Ų buried · 21 hydrogen bonds · protein-protein
Compared structures
- 4C5F · Structure of Lytic Transglycosylase MltC from Escherichia coli at 2.3 A resolution. · the same entry in another collection · chain A against A, TM-score 1.00
- C5A0N2 · AlphaFold monomer V2.0 prediction for membrane-bound lytic murein transglycosylase C… · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt C5A0N2
- Elsewhere: RCSB PDB 4C5F · PDBe 4C5F · UniProt C5A0N2
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