Research workbench
Structure of the outer membrane protein insertase bama with one potra domain.
Analyse Structure of the outer membrane protein insertase bama with one potra domain. in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4C4V
- Type
- protein
- Length
- 891 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Outer membrane protein assembly factor bama
- UniProt
- P0A940
- Pockets
- 6 · best druggability 0.81
Structure
x-ray diffraction · 2 distinct chains · 8% helix, 49% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Outer membrane protein assembly factor bama | protein | 445 | 8% helix, 50% strand | P0A940 |
| B | Outer membrane protein assembly factor bama | protein | 446 | 7% helix, 48% strand | P0A940 |
Pockets
6 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1048 | 0.81 | 0.82 | 73 | empty |
| 2 | 992 | 0.72 | 0.76 | 92 | empty |
| 3 | 1155 | 0.71 | 0.75 | 106 | empty |
| 4 | 75 | 0.48 | 0.83 | 16 | empty |
| 5 | 89 | 0.44 | 0.80 | 18 | empty |
Interfaces
1 interface between chains.
- A–B · 694 Ų buried · 3 hydrogen bonds · protein-protein
Compared structures
- 4C4V · Structure of the outer membrane protein insertase BamA with one POTRA domain. · the same entry in another collection · chain A against A, TM-score 1.00
- P0A940 · AlphaFold monomer V2.0 prediction for outer membrane protein assembly factor bama (P0A940) · a predicted model of the same protein · chain A against A, TM-score 0.84
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0A940
- Elsewhere: RCSB PDB 4C4V · PDBe 4C4V · UniProt P0A940
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