Research workbench
Glycoside hydrolase family 76 (mannosidase) BT3792 from bacteroides thetaiotaomicron vpi-5482
Analyse Glycoside hydrolase family 76 (mannosidase) BT3792 from bacteroides… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4C1S
- Type
- protein
- Length
- 750 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Glycoside hydrolase family 76 mannosidase
- EC
- 3.2.1.101
- UniProt
- Q8A174
- Pockets
- 9 · best druggability 0.71
Structure
x-ray diffraction · 1 distinct chain · 57% helix, 13% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Glycoside hydrolase family 76 mannosidase (EC 3.2.1.101) | protein | 375 | 57% helix, 13% strand | Q8A174 |
Ligands and binding sites
- EDO · 1,2-ethanediol · additive · 13 copies · chains A, B
- GOL · Glycerol · additive · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
9 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 281 | 0.71 | 0.85 | 38 | empty |
| 2 | 276 | 0.63 | 0.81 | 30 | EDO |
| 3 | 281 | 0.62 | 0.80 | 30 | EDO |
| 4 | 99 | 0.37 | 0.75 | 15 | empty |
| 5 | 89 | 0.37 | 0.75 | 14 | empty |
Interfaces
1 interface between chains.
- A–B · 505 Ų buried · 3 hydrogen bonds · protein-protein
Compared structures
- 4C1S · Glycoside hydrolase family 76 (mannosidase) Bt3792 from Bacteroides thetaiotaomicron… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8A174
- Elsewhere: RCSB PDB 4C1S · PDBe 4C1S · UniProt Q8A174
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