Research workbench

Geobacillus thermoglucosidasius gh family 52 xylosidase

Analyse Geobacillus thermoglucosidasius gh family 52 xylosidase in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 4C1O
Type: protein
Length: 702 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Beta-xylosidase
EC: 3.2.1.37
Ligands: NA, SO4
Pockets: 5 · best druggability 0.63

Structure

x-ray diffraction · 1 distinct chain · 38% helix, 21% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Beta-xylosidase (EC 3.2.1.37)	protein	702	38% helix, 21% strand	—

Ligands and binding sites

NA · Sodium ion · metal · chains A
SO4 · Sulfate ion · ion · 4 copies · chains A
GOL · Glycerol · additive · 17 copies · chains A
EDO · 1,2-ethanediol · additive · 5 copies · chains A
PEG · Di(hydroxyethyl)ether · additive · 5 copies · chains A
PGE · Triethylene glycol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

5 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	281	0.63	0.81	33	empty
2	66	0.42	0.81	14	empty
3	57	0.39	0.80	15	empty
4	58	0.38	0.79	14	empty
5	68	0.32	0.75	16	EDO

Compared structures

4C1O · Geobacillus thermoglucosidasius GH family 52 xylosidase · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 4C1O · PDBe 4C1O

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