Research workbench
Three-dimensional structure of paracoccus pantotrophus pseudoazurin at pH 6.5
Analyse Three-dimensional structure of paracoccus pantotrophus pseudoazurin at pH 6.5 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4BWT
- Type
- protein
- Length
- 246 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Pseudoazurin
- UniProt
- P80401
- Ligands
- CU, SO4
- Pockets
- 1 · best druggability 0.71
Structure
x-ray diffraction · 1 distinct chain · 16% helix, 36% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Pseudoazurin | protein | 123 | 16% helix, 36% strand | P80401 |
Ligands and binding sites
- CU · Copper (II) ion · metal · 2 copies · chains A, B
- SO4 · Sulfate ion · ion · 4 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 318 | 0.71 | 0.84 | 54 | SO4 |
Interfaces
1 interface between chains.
- A–B · 562 Ų buried · 4 hydrogen bonds · protein-protein
Compared structures
- 4BWT · Three-dimensional structure of Paracoccus pantotrophus pseudoazurin at pH 6.5 · the same entry in another collection · chain A against A, TM-score 1.00
- P80401 · AlphaFold monomer V2.0 prediction for pseudoazurin (P80401) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P80401
- Elsewhere: RCSB PDB 4BWT · PDBe 4BWT · UniProt P80401
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.