Research workbench
Crystal structure of the yeast ribosomal protein RPS3 in complex with its chaperone YAR1
Analyse Crystal structure of the yeast ribosomal protein RPS3 in complex with its… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4BSZ
- Type
- protein
- Length
- 337 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 40S ribosomal protein S3; Ankyrin repeat-containing protein YAR1
- UniProt
- P05750, P46683
- Pockets
- 3 · best druggability 0.58
Structure
x-ray diffraction · 2 distinct chains · 49% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | 40S ribosomal protein S3 | protein | 187 | 38% helix, 30% strand | P05750 |
| B | Ankyrin repeat-containing protein YAR1 | protein | 150 | 62% helix, 1% strand | P46683 |
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 234 | 0.58 | 0.79 | 37 | empty |
| 2 | 65 | 0.30 | 0.74 | 12 | empty |
| 3 | 66 | 0.30 | 0.74 | 13 | empty |
Interfaces
1 interface between chains.
- A–B · 1477 Ų buried · 25 hydrogen bonds · protein-protein
Compared structures
- 4BSZ · Crystal Structure of the Yeast Ribosomal Protein Rps3 in Complex with its Chaperone Yar1 · the same entry in another collection · chain A against A, TM-score 1.00
- P46683 · AlphaFold monomer V2.0 prediction for ankyrin repeat-containing protein YAR1 (P46683) · a predicted model of the same protein · chain B against A, TM-score 0.99
- P05750 · AlphaFold monomer V2.0 prediction for 40S ribosomal protein S3 (P05750) · a predicted model of the same protein · chain A against A, TM-score 0.49
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P05750
- Every structure of UniProt P46683
- Elsewhere: RCSB PDB 4BSZ · PDBe 4BSZ · UniProt P05750 · UniProt P46683
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