Research workbench

Adenovirus AD3 fibre head

Analyse Adenovirus AD3 fibre head in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1H7Z
Type: protein
Length: 573 residues
Chains: 3
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Adenovirus fibre protein
UniProt: P04501
Ligands: SO4
Pockets: 8 · best druggability 0.84

Structure

x-ray diffraction · 1 distinct chain · 7% helix, 41% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B, C	Adenovirus fibre protein	protein	191	7% helix, 41% strand	P04501

Ligands and binding sites

SO4 · Sulfate ion · ion · 8 copies · chains A, B, C

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

8 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	431	0.84	0.92	43	empty
2	92	0.69	0.93	31	empty
3	80	0.64	0.91	23	empty
4	110	0.60	0.86	32	empty
5	232	0.47	0.74	33	empty

Interfaces

3 interfaces between chains.

B–C · 980 Å² buried · 7 hydrogen bonds · protein-protein
A–B · 949 Å² buried · 7 hydrogen bonds · protein-protein
A–C · 909 Å² buried · 5 hydrogen bonds · protein-protein

Compared structures

1H7Z · Adenovirus Ad3 fibre head · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P04501
Elsewhere: RCSB PDB 1H7Z · PDBe 1H7Z · UniProt P04501

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.