Research workbench
Threading model of the T7 large terminase within the GP8GP19 complex
Analyse Threading model of the T7 large terminase within the GP8GP19 complex in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4BIL
- Type
- protein
- Length
- 2,380 residues
- Chains
- 5
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- DNA maturase B
- UniProt
- P03694
- Pockets
- 20 · best druggability 0.76
Structure
electron microscopy · 1 distinct chain · 34% helix, 16% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D, E | DNA maturase B | protein | 476 | 34% helix, 16% strand | P03694 |
Pockets
20 pockets found on a 1 Å grid, 20 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 271 | 0.76 | 0.89 | 57 | empty |
| 2 | 73 | 0.74 | 0.98 | 27 | empty |
| 3 | 260 | 0.73 | 0.87 | 53 | empty |
| 4 | 67 | 0.72 | 0.97 | 27 | empty |
| 5 | 58 | 0.70 | 0.97 | 22 | empty |
Compared structures
- 4BIL · Threading model of the T7 large terminase within the gp8gp19 complex · the same entry in another collection · chain E against E, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P03694
- Elsewhere: RCSB PDB 4BIL · PDBe 4BIL · UniProt P03694
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