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Crystal structure of wild-type SCP2 thiolase from trypanosoma brucei.
Analyse Crystal structure of wild-type SCP2 thiolase from trypanosoma brucei. in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4BI9
- Type
- protein
- Length
- 1,669 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 3-ketoacyl-CoA thiolase, putative
- EC
- 2.3.1.16
- UniProt
- Q57XD5
- Pockets
- 20 · best druggability 0.76
Structure
x-ray diffraction · 3 distinct chains · 36% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | 3-ketoacyl-CoA thiolase, putative (EC 2.3.1.16) | protein | 418 | 36% helix, 17% strand | Q57XD5 |
| B, D | 3-ketoacyl-CoA thiolase, putative (EC 2.3.1.16) | protein | 416 | 36% helix, 17% strand | Q57XD5 |
| C | 3-ketoacyl-CoA thiolase, putative (EC 2.3.1.16) | protein | 419 | 36% helix, 17% strand | Q57XD5 |
Pockets
20 pockets found on a 1 Å grid, 10 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 613 | 0.76 | 0.82 | 72 | empty |
| 2 | 469 | 0.72 | 0.81 | 46 | empty |
| 3 | 620 | 0.72 | 0.79 | 65 | empty |
| 4 | 64 | 0.72 | 0.97 | 25 | empty |
| 5 | 441 | 0.71 | 0.81 | 44 | empty |
Interfaces
3 interfaces between chains.
- A–B · 2235 Ų buried · 58 hydrogen bonds · protein-protein
- C–D · 2174 Ų buried · 36 hydrogen bonds · protein-protein
- B–C · 567 Ų buried · 4 hydrogen bonds · protein-protein
Compared structures
- 4BI9 · Crystal structure of wild-type SCP2 thiolase from Trypanosoma brucei. · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q57XD5
- Elsewhere: RCSB PDB 4BI9 · PDBe 4BI9 · UniProt Q57XD5
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