Research workbench
Apo form of a putative sugar kinase MK0840 from methanopyrus kandleri (orthorhombic space group)
Analyse Apo form of a putative sugar kinase MK0840 from methanopyrus kandleri… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4BG9
- Type
- protein
- Length
- 314 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Predicted molecular chaperone distantly related to HSP70-F old metalloproteases
- UniProt
- Q8TX37
- Ligands
- K, CL
- Pockets
- 1 · best druggability 0.67
Structure
x-ray diffraction · 1 distinct chain · 44% helix, 23% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Predicted molecular chaperone distantly related to HSP70-F old metalloproteases | protein | 314 | 44% helix, 23% strand | Q8TX37 |
Ligands and binding sites
- K · Potassium ion · metal · 3 copies · chains A
- CL · Chloride ion · ion · chains A
- ACT · Acetate ion · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 609 | 0.67 | 0.76 | 47 | empty |
Modifications
Observed in the structure: 4 modified (engineered).
Compared structures
- 4BG9 · Apo form of a putative sugar kinase MK0840 from Methanopyrus kandleri (orthorhombic space… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8TX37
- Elsewhere: RCSB PDB 4BG9 · PDBe 4BG9 · UniProt Q8TX37
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