Research workbench
X-ray crystal structure of patf from prochloron didemni
Analyse X-ray crystal structure of patf from prochloron didemni in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4BG2
- Type
- protein
- Length
- 595 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Patf
- UniProt
- Q52QJ2
- Pockets
- 4 · best druggability 0.83
Structure
x-ray diffraction · 2 distinct chains · 40% helix, 30% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Patf | protein | 297 | 40% helix, 30% strand | Q52QJ2 |
| B | Patf | protein | 298 | 40% helix, 30% strand | Q52QJ2 |
Pockets
4 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1051 | 0.83 | 0.84 | 95 | empty |
| 2 | 313 | 0.67 | 0.82 | 34 | empty |
| 3 | 278 | 0.65 | 0.81 | 28 | empty |
| 4 | 60 | 0.48 | 0.86 | 19 | empty |
Interfaces
1 interface between chains.
- A–B · 648 Ų buried · 6 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 4 modified, 2 disulfide (engineered, disulfide).
Compared structures
- 4BG2 · X-ray Crystal Structure of PatF from Prochloron didemni · the same entry in another collection · chain B against B, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q52QJ2
- Elsewhere: RCSB PDB 4BG2 · PDBe 4BG2 · UniProt Q52QJ2
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