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Crystal structure of the C-terminal cmp-kdo binding domain of waaa from acinetobacter baumannii

Analyse Crystal structure of the C-terminal cmp-kdo binding domain of waaa from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB
4BFC
Type
protein
Length
193 residues
Chains
1
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
3-deoxy-D-manno-octulosonic-acid transferase
UniProt
K5F2Z1
Ligands
SO4

Structure

x-ray diffraction · 1 distinct chain · 52% helix, 16% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
A3-deoxy-D-manno-octulosonic-acid transferaseprotein19352% helix, 16% strandK5F2Z1

Ligands and binding sites

  • SO4 · Sulfate ion · ion · chains A
  • BME · Beta-mercaptoethanol · additive · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Modifications

Observed in the structure: 1 covalent (additive adduct).

Compared structures

  • 4BFC · Crystal structure of the C-terminal CMP-Kdo binding domain of WaaA from Acinetobacter… · the same entry in another collection · chain A against A, TM-score 1.00

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