Research workbench
Crystal structure of the cxxc and phd domain of human lysine-specific demethylase 2A (KDM2A)(FBXL11)
Analyse Crystal structure of the cxxc and phd domain of human lysine-specific… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4BBQ
- Type
- protein
- Length
- 217 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Lysine-specific demethylase 2A
- EC
- 1.14.11.27
- UniProt
- Q9Y2K7
- Ligands
- ZN
Structure
x-ray diffraction · 2 distinct chains · 20% helix, 13% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Lysine-specific demethylase 2A (EC 1.14.11.27) | protein | 111 | 23% helix, 13% strand | Q9Y2K7 |
| B | Lysine-specific demethylase 2A (EC 1.14.11.27) | protein | 106 | 17% helix, 13% strand | Q9Y2K7 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 4BBQ · Crystal structure of the CXXC and PHD domain of Human Lysine-specific Demethylase 2A… · the same entry in another collection · chain A against A, TM-score 1.00
- Q9Y2K7 · AlphaFold monomer V2.0 prediction for lysine-specific demethylase 2A (Q9Y2K7) · a predicted model of the same protein · chain A against A, TM-score 0.93
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9Y2K7
- Elsewhere: RCSB PDB 4BBQ · PDBe 4BBQ · UniProt Q9Y2K7
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