Research workbench
Crystal structure of the yeast RSC2 bah domain
Analyse Crystal structure of the yeast RSC2 bah domain in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4BB7
- Type
- protein
- Length
- 938 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Chromatin structure-remodeling complex subunit RSC2
- UniProt
- Q06488
- Ligands
- SO4, CL
- Pockets
- 12 · best druggability 0.75
Structure
x-ray diffraction · 4 distinct chains · 9% helix, 38% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Chromatin structure-remodeling complex subunit RSC2 | protein | 235 | 9% helix, 39% strand | Q06488 |
| B | Chromatin structure-remodeling complex subunit RSC2 | protein | 234 | 9% helix, 38% strand | Q06488 |
| C | Chromatin structure-remodeling complex subunit RSC2 | protein | 234 | 8% helix, 38% strand | Q06488 |
| D | Chromatin structure-remodeling complex subunit RSC2 | protein | 235 | 9% helix, 37% strand | Q06488 |
Ligands and binding sites
- SO4 · Sulfate ion · ion · 8 copies · chains A, B, C, D
- CL · Chloride ion · ion · 8 copies · chains A, B, C, D
- GOL · Glycerol · additive · chains D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
12 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 994 | 0.75 | 0.78 | 84 | empty |
| 2 | 152 | 0.51 | 0.79 | 31 | empty |
| 3 | 149 | 0.50 | 0.78 | 28 | empty |
| 4 | 118 | 0.46 | 0.78 | 21 | empty |
| 5 | 69 | 0.35 | 0.77 | 19 | empty |
Interfaces
5 interfaces between chains.
- A–B · 447 Ų buried · 2 hydrogen bonds · protein-protein
- C–D · 361 Ų buried · 2 hydrogen bonds · protein-protein
- A–D · 259 Ų buried · 4 hydrogen bonds · protein-protein
- A–C · 74 Ų buried · 0 hydrogen bonds · protein-protein
- B–D · 15 Ų buried · 0 hydrogen bonds · protein-protein
Compared structures
- 4BB7 · Crystal structure of the yeast Rsc2 BAH domain · the same entry in another collection · chain D against D, TM-score 1.00
- Q06488 · AlphaFold monomer V2.0 prediction for chromatin structure-remodeling complex subunit RSC2… · a predicted model of the same protein · chain C against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q06488
- Elsewhere: RCSB PDB 4BB7 · PDBe 4BB7 · UniProt Q06488
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