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Crystal structure of an amyloid-beta binding single chain antibody G7

Analyse Crystal structure of an amyloid-beta binding single chain antibody G7 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB
4B41
Type
protein
Length
234 residues
Chains
2
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
Antibody G7
Ligands
CL

Structure

x-ray diffraction · 1 distinct chain · 9% helix, 44% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
A, BAntibody G7protein1179% helix, 44% strand—

Ligands and binding sites

  • CL · Chloride ion · ion · 4 copies · chains A, B
  • GOL · Glycerol · additive · chains B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Interfaces

1 interface between chains.

  • A–B · 533 Ų buried · 12 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 2 disulfide (disulfide).

Compared structures

  • 4B41 · Crystal structure of an amyloid-beta binding single chain antibody G7 · the same entry in another collection · chain A against A, TM-score 1.00

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