Research workbench
Crystal structure of 3-hydroxydecanoyl-acyl carrier protein dehydratase (faba) from pseudomonas aeruginosa in complex with 3-(pyridin-2-YLOXY)ANILINE
Analyse Crystal structure of 3-hydroxydecanoyl-acyl carrier protein dehydratase (faba)… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4B0B
- Type
- protein
- Length
- 339 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase
- EC
- 4.2.1.60
- UniProt
- O33877
- Ligands
- 54F
- Pockets
- 4 · best druggability 0.75
Structure
x-ray diffraction · 2 distinct chains · 18% helix, 37% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60) | protein | 170 | 18% helix, 37% strand | O33877 |
| B | 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60) | protein | 169 | 18% helix, 37% strand | O33877 |
Ligands and binding sites
- 54F · 3-(pyridin-2-yloxy)aniline · ligand · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 78 | 0.75 | 0.98 | 24 | 54F |
| 2 | 82 | 0.74 | 0.97 | 27 | 54F |
| 3 | 59 | 0.36 | 0.79 | 13 | empty |
| 4 | 59 | 0.35 | 0.78 | 12 | empty |
Interfaces
1 interface between chains.
- A–B · 1793 Ų buried · 34 hydrogen bonds · protein-protein
Compared structures
- 4B0B · Crystal Structure of 3-hydroxydecanoyl-Acyl Carrier Protein Dehydratase (FabA) from… · the same entry in another collection · chain A against A, TM-score 1.00
- O33877 · AlphaFold monomer V2.0 prediction for 3-hydroxydecanoyl-[acyl- carrier-protein]… · a predicted model of the same protein · chain B against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O33877
- Elsewhere: RCSB PDB 4B0B · PDBe 4B0B · UniProt O33877
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