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Crystal structure of monomeric wbdd.

Analyse Crystal structure of monomeric wbdd. in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 4AZW
Type: protein
Length: 413 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Wbdd
UniProt: Q47592
Ligands: ATP, SAM, MG
Pockets: 2 · best druggability 0.68

Structure

x-ray diffraction · 1 distinct chain · 41% helix, 22% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Wbdd	protein	413	41% helix, 22% strand	Q47592

Ligands and binding sites

ATP · Adenosine-5'-triphosphate · ligand · chains A
SAM · S-adenosylmethionine · ligand · chains A
MG · Magnesium ion · metal · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	305	0.68	0.82	40	ATP, MG
2	212	0.63	0.83	31	SAM

Compared structures

4AZW · Crystal structure of monomeric WbdD. · the same entry in another collection · chain A against A, TM-score 1.00
Q47592 · AlphaFold monomer V2.0 prediction for O-antigen chain terminator bifunctional… · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q47592
Elsewhere: RCSB PDB 4AZW · PDBe 4AZW · UniProt Q47592

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