Research workbench
Crystal structure of the sm-related protein of P. abyssi the biological unit is a heptamer
Analyse Crystal structure of the sm-related protein of P. abyssi the biological unit is… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1H64
- Type
- protein
- Length
- 1,988 residues
- Chains
- 28
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Snrnp sm-like protein
- UniProt
- Q9V0Y8
- Pockets
- 20 · best druggability 0.81
Structure
x-ray diffraction · 1 distinct chain · 13% helix, 61% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| 1, 2, A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z | Snrnp sm-like protein | protein | 71 | 13% helix, 61% strand | Q9V0Y8 |
Pockets
20 pockets found on a 1 Å grid, 8 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 830 | 0.81 | 0.83 | 97 | empty |
| 2 | 767 | 0.80 | 0.83 | 81 | empty |
| 3 | 368 | 0.75 | 0.86 | 57 | empty |
| 4 | 172 | 0.67 | 0.86 | 30 | empty |
| 5 | 142 | 0.63 | 0.86 | 19 | empty |
Interfaces
60 interfaces between chains.
- 1–Z · 877 Ų buried · 10 hydrogen bonds · protein-protein
- F–G · 823 Ų buried · 12 hydrogen bonds · protein-protein
- C–D · 817 Ų buried · 10 hydrogen bonds · protein-protein
- 1–2 · 815 Ų buried · 12 hydrogen bonds · protein-protein
- H–I · 814 Ų buried · 11 hydrogen bonds · protein-protein
Compared structures
- 1H64 · Crystal structure of the sm-related protein of P. abyssi: the biological unit is a… · the same entry in another collection · chain 1 against 1, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9V0Y8
- Elsewhere: RCSB PDB 1H64 · PDBe 1H64 · UniProt Q9V0Y8
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