Research workbench
Crystal structure of the reduced shewanella yellow enzyme 1 (SYE1) M25L mutant
Analyse Crystal structure of the reduced shewanella yellow enzyme 1 (SYE1) M25L mutant in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4AWT
- Type
- protein
- Length
- 364 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- SYE1
- EC
- 1.6.99.1
- UniProt
- Q8EEC8
- Ligands
- FMN, 01F, SO4
- Pockets
- 1 · best druggability 0.78
Structure
x-ray diffraction · 1 distinct chain · 36% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | SYE1 (EC 1.6.99.1) | protein | 364 | 36% helix, 18% strand | Q8EEC8 |
Ligands and binding sites
- FMN · Flavin mononucleotide · ligand · chains A
- 01F · ethyl hydrogen carbonate · ligand · chains A
- SO4 · Sulfate ion · ion · chains A
- BOG · octyl beta-D-glucopyranoside · additive · chains A
- PE4 · 2-{2-[2-(2-{2-[2-(2-ethoxy-ethoxy)-ethoxy]-ethoxy}-ethoxy)-ethoxy]-ethoxy}-ethanol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 349 | 0.78 | 0.88 | 47 | FMN, BOG |
Modifications
Observed in the structure: 1 modified (nonstandard).
Compared structures
- 4AWT · Crystal structure of the reduced Shewanella Yellow Enzyme 1 (SYE1) M25L mutant · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8EEC8
- Elsewhere: RCSB PDB 4AWT · PDBe 4AWT · UniProt Q8EEC8
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