Research workbench

Kluyveromyces lactis HSV2

Analyse Kluyveromyces lactis HSV2 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 4AV9
Type: protein
Length: 320 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: SVP1-like protein 2
UniProt: Q6CN23
Ligands: SO4
Pockets: 2 · best druggability 0.68

Structure

x-ray diffraction · 1 distinct chain · 1% helix, 53% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	SVP1-like protein 2	protein	320	1% helix, 53% strand	Q6CN23

Ligands and binding sites

SO4 · Sulfate ion · ion · 3 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	388	0.68	0.81	48	empty
2	75	0.32	0.74	20	empty

Compared structures

4AV9 · Kluyveromyces lactis Hsv2 · the same entry in another collection · chain A against A, TM-score 1.00
Q6CN23 · AlphaFold monomer V2.0 prediction for SVP1-like protein 2 (Q6CN23) · a predicted model of the same protein · chain A against A, TM-score 0.95

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q6CN23
Elsewhere: RCSB PDB 4AV9 · PDBe 4AV9 · UniProt Q6CN23

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