Research workbench
Structure of the inactive pesticin E178A mutant
Analyse Structure of the inactive pesticin E178A mutant in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4ARP
- Type
- protein
- Length
- 680 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Pesticin
- UniProt
- Q57159
- Pockets
- 9 · best druggability 0.59
Structure
x-ray diffraction · 1 distinct chain · 39% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Pesticin | protein | 340 | 39% helix, 18% strand | Q57159 |
Pockets
9 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 475 | 0.59 | 0.74 | 50 | empty |
| 2 | 384 | 0.57 | 0.74 | 36 | empty |
| 3 | 328 | 0.54 | 0.75 | 40 | empty |
| 4 | 144 | 0.44 | 0.76 | 24 | empty |
| 5 | 127 | 0.42 | 0.76 | 20 | empty |
Interfaces
1 interface between chains.
- A–B · 262 Ų buried · 2 hydrogen bonds · protein-protein
Compared structures
- 4ARP · Structure of the inactive pesticin E178A mutant · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q57159
- Elsewhere: RCSB PDB 4ARP · PDBe 4ARP · UniProt Q57159
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