Research workbench
X ray structure of the periplasmic zinc binding protein zint from salmonella enterica
Analyse X ray structure of the periplasmic zinc binding protein zint from salmonella… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4ARH
- Type
- protein
- Length
- 186 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Metal-binding protein yoda
- UniProt
- B5MZR0
- Ligands
- SO4
- Pockets
- 2 · best druggability 0.65
Structure
x-ray diffraction · 1 distinct chain · 29% helix, 31% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Metal-binding protein yoda | protein | 186 | 29% helix, 31% strand | B5MZR0 |
Ligands and binding sites
- SO4 · Sulfate ion · ion · 6 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 396 | 0.65 | 0.79 | 38 | SO4 |
| 2 | 69 | 0.32 | 0.75 | 14 | SO4 |
Modifications
Observed in the structure: 1 disulfide (disulfide).
Compared structures
- 4ARH · X ray structure of the periplasmic zinc binding protein ZinT from Salmonella enterica · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B5MZR0
- Elsewhere: RCSB PDB 4ARH · PDBe 4ARH · UniProt B5MZR0
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