Research workbench
Crystal structure of the marine crustacean decapod shrimp (litopenaeus vannamei) arginine kinase in the absence of substrate or ligands.
Analyse Crystal structure of the marine crustacean decapod shrimp (litopenaeus… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4AM1
- Type
- protein
- Length
- 345 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Arginine kinase
- EC
- 2.7.3.3
- UniProt
- Q004B5
- Pockets
- 1 · best druggability 0.54
Structure
x-ray diffraction · 1 distinct chain · 41% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Arginine kinase (EC 2.7.3.3) | protein | 345 | 41% helix, 17% strand | Q004B5 |
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 317 | 0.54 | 0.75 | 44 | empty |
Compared structures
- 4AM1 · Crystal structure of the marine crustacean decapod shrimp (Litopenaeus vannamei) arginine… · the same entry in another collection · chain A against A, TM-score 1.00
- Q004B5 · AlphaFold monomer V2.0 prediction for arginine kinase lit V 2.0101 (Q004B5) · a predicted model of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q004B5
- Elsewhere: RCSB PDB 4AM1 · PDBe 4AM1 · UniProt Q004B5
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