Research workbench
Structure of chloroplast ftsy from physcomitrella patens
Analyse Structure of chloroplast ftsy from physcomitrella patens in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4AK9
- Type
- protein
- Length
- 599 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Cpftsy
- UniProt
- A9SNI6
- Pockets
- 6 · best druggability 0.62
Structure
x-ray diffraction · 2 distinct chains · 54% helix, 13% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Cpftsy | protein | 302 | 55% helix, 13% strand | A9SNI6 |
| B | Cpftsy | protein | 297 | 54% helix, 14% strand | A9SNI6 |
Pockets
6 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 395 | 0.62 | 0.77 | 50 | empty |
| 2 | 329 | 0.59 | 0.77 | 47 | empty |
| 3 | 253 | 0.56 | 0.78 | 26 | empty |
| 4 | 98 | 0.47 | 0.80 | 17 | empty |
| 5 | 125 | 0.39 | 0.75 | 23 | empty |
Interfaces
1 interface between chains.
- A–B · 1105 Ų buried · 20 hydrogen bonds · protein-protein
Compared structures
- 4AK9 · Structure of chloroplast FtsY from Physcomitrella patens · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A9SNI6
- Elsewhere: RCSB PDB 4AK9 · PDBe 4AK9 · UniProt A9SNI6
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