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FLO5A showing a heptanuclear gadolinium cluster on its surface

Analyse FLO5A showing a heptanuclear gadolinium cluster on its surface in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 4AHW
Type: protein
Length: 258 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Flocculation protein FLO5
UniProt: P38894
Ligands: GD, CL
Pockets: 1 · best druggability 0.27

Structure

x-ray diffraction · 1 distinct chain · 7% helix, 39% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Flocculation protein FLO5	protein	258	7% helix, 39% strand	P38894

Ligands and binding sites

GD · Gadolinium atom · metal · 12 copies · chains A
CL · Chloride ion · ion · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	54	0.27	0.75	21	empty

Modifications

Observed in the structure: 4 disulfide (disulfide).

Compared structures

4AHW · Flo5A showing a heptanuclear gadolinium cluster on its surface · the same entry in another collection · chain A against A, TM-score 1.00
P38894 · AlphaFold monomer V2.0 prediction for flocculation protein FLO5 (P38894) · a predicted model of the same protein · chain A against A, TM-score 0.96

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P38894
Elsewhere: RCSB PDB 4AHW · PDBe 4AHW · UniProt P38894

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