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Crystal structure of deinococcus radiodurans recn head domain
Analyse Crystal structure of deinococcus radiodurans recn head domain in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4ABY
- Type
- protein
- Length
- 1,381 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- DNA repair protein recn
- EC
- 3.6.1.3
- UniProt
- Q9WXF2
- Pockets
- 4 · best druggability 0.54
Structure
x-ray diffraction · 4 distinct chains · 42% helix, 27% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | DNA repair protein recn (EC 3.6.1.3) | protein | 358 | 43% helix, 27% strand | Q9WXF2 |
| B | DNA repair protein recn (EC 3.6.1.3) | protein | 361 | 41% helix, 27% strand | Q9WXF2 |
| C | DNA repair protein recn (EC 3.6.1.3) | protein | 351 | 42% helix, 27% strand | Q9WXF2 |
| D | DNA repair protein recn (EC 3.6.1.3) | protein | 311 | 43% helix, 26% strand | Q9WXF2 |
Pockets
4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 345 | 0.54 | 0.74 | 48 | empty |
| 2 | 193 | 0.51 | 0.77 | 31 | empty |
| 3 | 58 | 0.33 | 0.77 | 10 | empty |
| 4 | 57 | 0.32 | 0.77 | 12 | empty |
Interfaces
1 interface between chains.
- A–B · 259 Ų buried · 2 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 16 modified (engineered).
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9WXF2
- Elsewhere: RCSB PDB 4ABY · PDBe 4ABY · UniProt Q9WXF2
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