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Crystal structure of the ubl domain of MDY2 (GET5) at 1.78A

Analyse Crystal structure of the ubl domain of MDY2 (GET5) at 1.78A in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 4A20
Type: protein
Length: 80 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Ubiquitin-like protein MDY2
UniProt: Q12285
Ligands: SO4

Structure

x-ray diffraction · 1 distinct chain · 20% helix, 40% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Ubiquitin-like protein MDY2	protein	80	20% helix, 40% strand	Q12285

Ligands and binding sites

SO4 · Sulfate ion · ion · 3 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

4A20 · Crystal structure of the Ubl domain of Mdy2 (Get5) at 1.78A · the same entry in another collection · chain A against A, TM-score 1.00
Q12285 · AlphaFold monomer V2.0 prediction for ubiquitin-like protein MDY2 (Q12285) · a predicted model of the same protein · chain A against A, TM-score 0.96

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q12285
Elsewhere: RCSB PDB 4A20 · PDBe 4A20 · UniProt Q12285

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