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Crystal structure of the cytoplasmic N-terminal domain of yersinia pestis yscd

Analyse Crystal structure of the cytoplasmic N-terminal domain of yersinia pestis yscd in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 4A0E
Type: protein
Length: 216 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Type III secretion protein
UniProt: Q1BZW5
Pockets: 1 · best druggability 0.51

Structure

x-ray diffraction · 1 distinct chain · 3% helix, 42% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Type III secretion protein	protein	108	3% helix, 42% strand	Q1BZW5

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	76	0.51	0.84	20	empty

Interfaces

1 interface between chains.

A–B · 297 Å² buried · 1 hydrogen bond · protein-protein

Compared structures

4A0E · Crystal structure of the cytoplasmic N-terminal domain of Yersinia pestis YscD · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q1BZW5
Elsewhere: RCSB PDB 4A0E · PDBe 4A0E · UniProt Q1BZW5

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