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Crystal structure a DNA:RNA hybrid duplex, a dynamic model for RNase H recognition
Analyse Crystal structure a DNA:RNA hybrid duplex, a dynamic model for RNase H… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 479D
- Type
- DNA + RNA
- Length
- 18 nucleotides
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- DNA (5'-D(*CP*TP*CP*TP*TP*CP*TP*TP*C)-3'); RNA (5'-R(*GP*AP*AP*GP*AP*AP*GP*AP*G)-3')
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | DNA (5'-D(*CP*TP*CP*TP*TP*CP*TP*TP*C)-3') | dna | 9 | — | — |
| B | RNA (5'-R(*GP*AP*AP*GP*AP*AP*GP*AP*G)-3') | rna | 9 | — | — |
Interfaces
1 interface between chains.
- A–B · 427 Ų buried · 40 hydrogen bonds · nucleic-nucleic
Compared structures
- 479D · Crystal structure a DNA:RNA hybrid duplex, a dynamic model for RNase H recognition · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 479D · PDBe 479D
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