Research workbench
5'-R(*CP*UP*GP*GP*GP*CP*GP*G)-3', 5'- R(*CP*CP*GP*CP*CP*UP*GP*G)-3'
Analyse 5'-R(*CP*UP*GP*GP*GP*CP*GP*G)-3', 5'- R(*CP*CP*GP*CP*CP*UP*GP*G)-3' in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 439D
- Type
- RNA
- Length
- 16 nucleotides
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- RNA (5'-R(*CP*UP*GP*GP*GP*CP*GP*G)-3'); RNA (5'-R(*CP*CP*GP*CP*CP*UP*GP*G)-3')
- Ligands
- BA
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | RNA (5'-R(*CP*UP*GP*GP*GP*CP*GP*G)-3') | rna | 8 | — | — |
| B | RNA (5'-R(*CP*CP*GP*CP*CP*UP*GP*G)-3') | rna | 8 | — | — |
Ligands and binding sites
- BA · Barium ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 445 Ų buried · 41 hydrogen bonds · nucleic-nucleic
Compared structures
- 439D · 5'-R(*CP*UP*GP*GP*GP*CP*GP*G)-3', 5'-R(*CP*CP*GP*CP*CP*UP*GP*G)-3' · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 439D · PDBe 439D
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