Research workbench
5'-D(*AP*CP*CP*GP*AP*CP*GP*TP*CP*GP*GP*T)-3'
Analyse 5'-D(*AP*CP*CP*GP*AP*CP*GP*TP*CP*GP*GP*T)-3' in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 424D
- Type
- DNA
- Length
- 72 nucleotides
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- DNA (5'-D(*AP*CP*CP*GP*AP*CP*GP*TP*CP*GP*GP*T)- 3')
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D, E, F | DNA (5'-D(*AP*CP*CP*GP*AP*CP*GP*TP*CP*GP*GP*T)- 3') | dna | 12 | — | — |
Interfaces
5 interfaces between chains.
- C–D · 548 Ų buried · 50 hydrogen bonds · nucleic-nucleic
- A–B · 545 Ų buried · 47 hydrogen bonds · nucleic-nucleic
- E–F · 540 Ų buried · 46 hydrogen bonds · nucleic-nucleic
- D–F · 55 Ų buried · 1 hydrogen bond · nucleic-nucleic
- A–E · 39 Ų buried · 0 hydrogen bonds · nucleic-nucleic
Compared structures
- 424D · 5'-D(*AP*CP*CP*GP*AP*CP*GP*TP*CP*GP*GP*T)-3' · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 424D · PDBe 424D
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