Research workbench
5'-D(*GP*GP*GP*GP*CP*GP*CP*CP*CP*C)-3'
Analyse 5'-D(*GP*GP*GP*GP*CP*GP*CP*CP*CP*C)-3' in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 414D
- Type
- DNA
- Length
- 40 nucleotides
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- DNA (5'-D(*GP*GP*GP*GP*CP*GP*CP*CP*CP*C)-3')
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D | DNA (5'-D(*GP*GP*GP*GP*CP*GP*CP*CP*CP*C)-3') | dna | 10 | — | — |
Interfaces
6 interfaces between chains.
- C–D · 506 Ų buried · 46 hydrogen bonds · nucleic-nucleic
- A–B · 499 Ų buried · 48 hydrogen bonds · nucleic-nucleic
- A–D · 142 Ų buried · 2 hydrogen bonds · nucleic-nucleic
- A–C · 134 Ų buried · 4 hydrogen bonds · nucleic-nucleic
- B–C · 122 Ų buried · 1 hydrogen bond · nucleic-nucleic
Compared structures
- 414D · 5'-D(*GP*GP*GP*GP*CP*GP*CP*CP*CP*C)-3' · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 414D · PDBe 414D
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