Research workbench
Cryo-EM reconstruction of native and expanded turnip crinkle virus
Analyse Cryo-EM reconstruction of native and expanded turnip crinkle virus in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3ZX9
- Type
- protein
- Length
- 828 residues
- Chains
- 3
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Capsid protein
- UniProt
- P06663
- Pockets
- 10 · best druggability 0.78
Structure
electron microscopy · 2 distinct chains · 1% helix, 13% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Capsid protein | protein | 267 | 1% helix, 13% strand | P06663 |
| C | Capsid protein | protein | 294 | 1% helix, 13% strand | P06663 |
Pockets
10 pockets found on a 1 Å grid, 6 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 151 | 0.78 | 0.95 | 29 | empty |
| 2 | 147 | 0.78 | 0.95 | 34 | empty |
| 3 | 154 | 0.78 | 0.94 | 36 | empty |
| 4 | 348 | 0.60 | 0.77 | 41 | empty |
| 5 | 186 | 0.52 | 0.78 | 32 | empty |
Modifications
Observed in the structure: 3 isopeptide (isopeptide).
Compared structures
- 3ZX9 · Cryo-EM reconstruction of native and expanded Turnip Crinkle virus · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P06663
- Elsewhere: RCSB PDB 3ZX9 · PDBe 3ZX9 · UniProt P06663
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