Research workbench
Structure of haemophilus influenzae NAD nucleotidase (nadn)
Analyse Structure of haemophilus influenzae NAD nucleotidase (nadn) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3ZTV
- Type
- protein
- Length
- 565 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- NAD nucleotidase
- EC
- 3.1.3.5
- UniProt
- Q4QNY4
- Ligands
- ADN, ZN
- Pockets
- 3 · best druggability 0.65
Structure
x-ray diffraction · 1 distinct chain · 31% helix, 31% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | NAD nucleotidase (EC 3.1.3.5) | protein | 565 | 31% helix, 31% strand | Q4QNY4 |
Ligands and binding sites
- ADN · Adenosine · ligand · chains A
- ZN · Zinc ion · metal · 2 copies · chains A
- GOL · Glycerol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 679 | 0.65 | 0.74 | 75 | GOL |
| 2 | 146 | 0.50 | 0.79 | 27 | empty |
| 3 | 96 | 0.38 | 0.76 | 21 | empty |
Compared structures
- 3ZTV · Structure of Haemophilus influenzae NAD nucleotidase (NadN) · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q4QNY4
- Elsewhere: RCSB PDB 3ZTV · PDBe 3ZTV · UniProt Q4QNY4
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