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Crystal structure of decameric form of peroxiredoxin I from schistosoma mansoni
Analyse Crystal structure of decameric form of peroxiredoxin I from schistosoma mansoni in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3ZTL
- Type
- protein
- Length
- 1,793 residues
- Chains
- 10
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Thioredoxin peroxidase
- EC
- 1.11.1.15
- UniProt
- O97161
- Pockets
- 20 · best druggability 0.75
Structure
x-ray diffraction · 9 distinct chains · 29% helix, 27% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, G | Thioredoxin peroxidase (EC 1.11.1.15) | protein | 180 | 30% helix, 28% strand | O97161 |
| B | Thioredoxin peroxidase (EC 1.11.1.15) | protein | 183 | 30% helix, 28% strand | O97161 |
| C | Thioredoxin peroxidase (EC 1.11.1.15) | protein | 182 | 30% helix, 28% strand | O97161 |
| D | Thioredoxin peroxidase (EC 1.11.1.15) | protein | 172 | 30% helix, 27% strand | O97161 |
| E | Thioredoxin peroxidase (EC 1.11.1.15) | protein | 176 | 30% helix, 27% strand | O97161 |
| F | Thioredoxin peroxidase (EC 1.11.1.15) | protein | 181 | 30% helix, 28% strand | O97161 |
| H | Thioredoxin peroxidase (EC 1.11.1.15) | protein | 178 | 26% helix, 26% strand | O97161 |
| I | Thioredoxin peroxidase (EC 1.11.1.15) | protein | 178 | 29% helix, 26% strand | O97161 |
| J | Thioredoxin peroxidase (EC 1.11.1.15) | protein | 183 | 28% helix, 28% strand | O97161 |
Pockets
20 pockets found on a 1 Å grid, 9 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 71 | 0.75 | 0.99 | 23 | empty |
| 2 | 72 | 0.74 | 0.98 | 22 | empty |
| 3 | 56 | 0.72 | 0.99 | 21 | empty |
| 4 | 52 | 0.70 | 0.98 | 20 | empty |
| 5 | 261 | 0.55 | 0.77 | 35 | empty |
Interfaces
10 interfaces between chains.
- A–B · 1911 Ų buried · 26 hydrogen bonds · protein-protein
- I–J · 1872 Ų buried · 31 hydrogen bonds · protein-protein
- C–D · 1843 Ų buried · 26 hydrogen bonds · protein-protein
- E–F · 1813 Ų buried · 28 hydrogen bonds · protein-protein
- G–H · 1810 Ų buried · 28 hydrogen bonds · protein-protein
Compared structures
- 3ZTL · Crystal structure of decameric form of Peroxiredoxin I from Schistosoma mansoni · the same entry in another collection · chain I against I, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O97161
- Elsewhere: RCSB PDB 3ZTL · PDBe 3ZTL · UniProt O97161
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