Research workbench
Crystal structure of ERV41P
Analyse Crystal structure of ERV41P in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3ZLC
- Type
- protein
- Length
- 432 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Er-derived vesicles protein ERV41
- UniProt
- Q04651
- Pockets
- 8 · best druggability 0.52
Structure
x-ray diffraction · 2 distinct chains · 6% helix, 47% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Er-derived vesicles protein ERV41 | protein | 216 | 7% helix, 44% strand | Q04651 |
| B | Er-derived vesicles protein ERV41 | protein | 216 | 6% helix, 50% strand | Q04651 |
Pockets
8 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 105 | 0.52 | 0.82 | 20 | empty |
| 2 | 257 | 0.51 | 0.75 | 35 | empty |
| 3 | 105 | 0.48 | 0.81 | 20 | empty |
| 4 | 156 | 0.47 | 0.77 | 24 | empty |
| 5 | 86 | 0.45 | 0.81 | 19 | empty |
Interfaces
1 interface between chains.
- A–B · 2016 Ų buried · 29 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 2 disulfide (disulfide).
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q04651
- Elsewhere: RCSB PDB 3ZLC · PDBe 3ZLC · UniProt Q04651
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