Research workbench
Potassium bound structure of E. COLI exoix in P1
Analyse Potassium bound structure of E. COLI exoix in P1 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3ZD8
- Type
- protein
- Length
- 478 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Protein xni
- EC
- 3.1.-.-
- UniProt
- Q8X6R9
- Ligands
- K
- Pockets
- 3 · best druggability 0.76
Structure
x-ray diffraction · 2 distinct chains · 55% helix, 12% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Protein xni (EC 3.1.-.-) | protein | 239 | 55% helix, 12% strand | Q8X6R9 |
| B | Protein xni (EC 3.1.-.-) | protein | 239 | 55% helix, 12% strand | Q8X6R9 |
Ligands and binding sites
- K · Potassium ion · metal · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 603 | 0.76 | 0.82 | 48 | empty |
| 2 | 600 | 0.67 | 0.76 | 53 | empty |
| 3 | 268 | 0.58 | 0.78 | 32 | empty |
Interfaces
1 interface between chains.
- A–B · 727 Ų buried · 14 hydrogen bonds · protein-protein
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8X6R9
- Elsewhere: RCSB PDB 3ZD8 · PDBe 3ZD8 · UniProt Q8X6R9
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.