Research workbench
Crystal structure of helicobacter pylori T4SS protein cagl in a cubic crystal form with a distorted helical conformation of the rgd-motif
Analyse Crystal structure of helicobacter pylori T4SS protein cagl in a cubic crystal… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3ZCI
- Type
- protein
- Length
- 191 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Cag pathogenicity island protein (CAG18)
- UniProt
- O25272
- Ligands
- BU9, SO4, CL
- Pockets
- 1 · best druggability 0.44
Structure
x-ray diffraction · 1 distinct chain · 87% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Cag pathogenicity island protein (CAG18) | protein | 191 | 87% helix, 0% strand | O25272 |
Ligands and binding sites
- BU9 · Meso-2,3-Butanediol · ligand · 3 copies · chains A
- SO4 · Sulfate ion · ion · 3 copies · chains A
- CL · Chloride ion · ion · chains A
- DIO · 1,4-diethylene dioxide · additive · 3 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 79 | 0.44 | 0.81 | 17 | DIO |
Modifications
Observed in the structure: 5 modified (engineered).
Compared structures
- 3ZCI · Crystal structure of Helicobacter pylori T4SS protein CagL in a cubic crystal form with a… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O25272
- Elsewhere: RCSB PDB 3ZCI · PDBe 3ZCI · UniProt O25272
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.