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Crystal structure of AFCSX3

Analyse Crystal structure of AFCSX3 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB
3WZH
Type
protein
Length
198 residues
Chains
2
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
Uncharacterized protein AF_1864
UniProt
O28415
Ligands
MN
Pockets
1 · best druggability 0.38

Structure

x-ray diffraction · 2 distinct chains · 15% helix, 34% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
AUncharacterized protein AF_1864protein9815% helix, 35% strandO28415
BUncharacterized protein AF_1864protein10015% helix, 33% strandO28415

Ligands and binding sites

  • MN · Manganese (II) ion · metal · 5 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

PocketVolume (ų)DruggabilityBuriednessLining residuesInside
11090.380.7523empty

Interfaces

1 interface between chains.

  • A–B · 1102 Ų buried · 9 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 6 modified (engineered).

Compared structures

  • 3WZH · Crystal structure of AfCsx3 · the same entry in another collection · chain A against A, TM-score 1.00
  • O28415 · AlphaFold monomer V2.0 prediction for uncharacterized protein AF_1864 (O28415) · a predicted model of the same protein · chain A against A, TM-score 0.93

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