Research workbench
Crystal structure of pyrococcus furiosus pbaa, an archaeal homolog of proteasome-assembly chaperone
Analyse Crystal structure of pyrococcus furiosus pbaa, an archaeal homolog of… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3WZ2
- Type
- protein
- Length
- 1,129 residues
- Chains
- 5
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Uncharacterized protein
- UniProt
- Q8U4Q9
- Pockets
- 11 · best druggability 0.73
Structure
x-ray diffraction · 5 distinct chains · 40% helix, 27% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Uncharacterized protein | protein | 226 | 40% helix, 27% strand | Q8U4Q9 |
| B | Uncharacterized protein | protein | 228 | 41% helix, 27% strand | Q8U4Q9 |
| C | Uncharacterized protein | protein | 227 | 40% helix, 27% strand | Q8U4Q9 |
| D | Uncharacterized protein | protein | 227 | 40% helix, 27% strand | Q8U4Q9 |
| E | Uncharacterized protein | protein | 221 | 40% helix, 25% strand | Q8U4Q9 |
Pockets
11 pockets found on a 1 Å grid, 7 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 834 | 0.73 | 0.78 | 87 | empty |
| 2 | 880 | 0.72 | 0.76 | 90 | empty |
| 3 | 765 | 0.71 | 0.77 | 83 | empty |
| 4 | 277 | 0.64 | 0.81 | 39 | empty |
| 5 | 498 | 0.63 | 0.76 | 52 | empty |
Interfaces
5 interfaces between chains.
- A–E · 924 Ų buried · 15 hydrogen bonds · protein-protein
- C–D · 896 Ų buried · 13 hydrogen bonds · protein-protein
- A–B · 893 Ų buried · 15 hydrogen bonds · protein-protein
- D–E · 886 Ų buried · 12 hydrogen bonds · protein-protein
- B–C · 859 Ų buried · 13 hydrogen bonds · protein-protein
Compared structures
- 3WZ2 · Crystal structure of Pyrococcus furiosus PbaA, an archaeal homolog of proteasome-assembly… · the same entry in another collection · chain C against C, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8U4Q9
- Elsewhere: RCSB PDB 3WZ2 · PDBe 3WZ2 · UniProt Q8U4Q9
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