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Crystal structure of metagenome-derived glycoside hydrolase family 12 endoglucanase
Analyse Crystal structure of metagenome-derived glycoside hydrolase family 12… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3WX5
- Type
- protein
- Length
- 458 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Cellulase
- EC
- 3.2.1.4
- UniProt
- W8PWF3
- Pockets
- 3 · best druggability 0.47
Structure
x-ray diffraction · 1 distinct chain · 7% helix, 53% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Cellulase (EC 3.2.1.4) | protein | 229 | 7% helix, 53% strand | W8PWF3 |
Pockets
3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 185 | 0.47 | 0.75 | 37 | empty |
| 2 | 130 | 0.44 | 0.76 | 26 | empty |
| 3 | 57 | 0.28 | 0.75 | 18 | empty |
Interfaces
1 interface between chains.
- A–B · 121 Ų buried · 2 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 4 disulfide (disulfide).
Compared structures
- 3WX5 · Crystal structure of metagenome-derived glycoside hydrolase family 12 endoglucanase · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt W8PWF3
- Elsewhere: RCSB PDB 3WX5 · PDBe 3WX5 · UniProt W8PWF3
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