Research workbench

Crystal structure of lysz from thermus thermophilus with ADP

Analyse Crystal structure of lysz from thermus thermophilus with ADP in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3WWM
Type: protein
Length: 269 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Putative acetylglutamate kinase-like protein
UniProt: O50147
Ligands: ADP
Pockets: 1 · best druggability 0.64

Structure

x-ray diffraction · 1 distinct chain · 38% helix, 25% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Putative acetylglutamate kinase-like protein	protein	269	38% helix, 25% strand	O50147

Ligands and binding sites

ADP · Adenosine-5'-diphosphate · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	555	0.64	0.76	52	ADP

Compared structures

3WWM · Crystal structure of LysZ from Thermus thermophilus with ADP · the same entry in another collection · chain A against A, TM-score 1.00
O50147 · AlphaFold monomer V2.0 prediction for [lysw]-aminoadipate kinase (O50147) · a predicted model of the same protein · chain A against A, TM-score 0.97

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt O50147
Elsewhere: RCSB PDB 3WWM · PDBe 3WWM · UniProt O50147

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.