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Crystal structure of the computationally designed PIZZA2-sr protein

Analyse Crystal structure of the computationally designed PIZZA2-sr protein in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3WWB
Type: protein
Length: 247 residues
Chains: 3
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: PIZZA2-sr protein
Pockets: 1 · best druggability 0.73

Structure

x-ray diffraction · 2 distinct chains · 7% helix, 44% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, C	PIZZA2-sr protein	protein	82	7% helix, 43% strand	—
B	PIZZA2-sr protein	protein	83	7% helix, 45% strand	—

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	429	0.73	0.83	52	empty

Interfaces

3 interfaces between chains.

B–C · 833 Å² buried · 11 hydrogen bonds · protein-protein
A–B · 803 Å² buried · 8 hydrogen bonds · protein-protein
A–C · 799 Å² buried · 9 hydrogen bonds · protein-protein

Compared structures

3WWB · Crystal structure of the computationally designed Pizza2-SR protein · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 3WWB · PDBe 3WWB

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