Research workbench
Crystal structure of nn domain of resistance protein
Analyse Crystal structure of nn domain of resistance protein in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3WRV
- Type
- protein
- Length
- 365 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Tm-1 protein
- UniProt
- A7M6E7
- Pockets
- 2 · best druggability 0.53
Structure
x-ray diffraction · 2 distinct chains · 46% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Tm-1 protein | protein | 192 | 47% helix, 17% strand | A7M6E7 |
| B | Tm-1 protein | protein | 173 | 45% helix, 18% strand | A7M6E7 |
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 76 | 0.53 | 0.85 | 16 | empty |
| 2 | 60 | 0.49 | 0.85 | 17 | empty |
Interfaces
1 interface between chains.
- A–B · 1225 Ų buried · 17 hydrogen bonds · protein-protein
Compared structures
- 3WRV · Crystal structure of NN domain of resistance protein · the same entry in another collection · chain A against A, TM-score 1.00
- A7M6E7 · AlphaFold monomer V2.0 prediction for tomv resistance protein tm-1(GCR237) (A7M6E7) · a predicted model of the same protein · chain A against A, TM-score 0.96
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A7M6E7
- Elsewhere: RCSB PDB 3WRV · PDBe 3WRV · UniProt A7M6E7
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